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Khushbu Patel 👋 Linkedin Badge

Learning with the challenges | Growing with the data

  • 👩‍🔬 Bioinformatics Scientist
  • 🔭 Currently working at the Children's Hospital of Philadelphia
  • 💻 Experienced working with transcriptomics and genomics data, data visualization and data analysis in R
  • 🔍 Find out more about me here: khushbupatel.info

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Khushbu Patel's Projects

2021_datathon icon 2021_datathon

Public repository for the R-Ladies Philly & JAT datathon on "Exploring judicial patterns in Philadelphia courts"

advanced-shiny icon advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

bash icon bash

useful bash one-liners and scripts

de_analysis icon de_analysis

Scripts to run differential expression analysis using DESeq2 package

deconvolute_rnaseq icon deconvolute_rnaseq

scripts that uses tools to deconvolute immune cells types from bulk RNA-Seq data

geoquery-scripts icon geoquery-scripts

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

lyve-set icon lyve-set

LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

r-scripts icon r-scripts

Miscellaneous R script to wrangle data and generate visualizations

rsem icon rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

rshiny icon rshiny

Working example scripts to implement small tricks in Shiny app

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