Comments (2)
You need to increase the timeout, as the default 10 seconds it apparently is too short for such a number of SNPs. To do so you just pass a timeout
argument to EntrezAPI
, like so:
from easy_entrez import EntrezAPI
entrez_api = EntrezAPI(
'your-tool-name',
'[email protected]',
timeout=10 * 60, # 10 minutes
# other arguments here
)
which is documented in the documentation: https://easy-entrez.readthedocs.io/en/latest/usage.html#easy_entrez.api.EntrezAPI
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I will close this one as answered, but please feel free to ask any follow-up questions as new issues. I hope you enjoy this package :)
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