Comments (2)
It doesn't have to be, but it can.
Either: raw count matrix -> library size normalize -> MAGIC
or: raw count matrix -> library size normalize -> log transform (don't forget pseudo count) -> MAGIC
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Thanks! Btw there seems to be a bug in the current log_transform function (should it be referencing self.data instead of scdata.data?)
Also this method is awesome! It runs super fast and seems to work well on our datasets so far!
from magic.
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