Comments (2)
pkathail
commented on August 17, 2024
Hi Beate,
The R version of MAGIC was very recently implemented, so definitely might still contain some bugs. I'll update the DESCRIPTION and NAMESPACE with the suggestions you mentioned. The %^% function is implemented in our source code, in run_magic.R, so that error might also be a namespace issue.
As to the memory issue, I've been testing it with a matrix of about 20,000 genes x 4000 cells, and haven't run into any issues yet running it locally, so I'm not sure what the issue is there. Sorry I can't be of more help, but if you figure out what the problem is, please let me know so we can figure out a fix!
from magic.
pkathail
commented on August 17, 2024
Pushed a change that I think should fix some of these issues, please let me know if you're still having problems.
from magic.
Related Issues (20)
- Magic issue with mkl
- Suggestions for Unable to allocate 276. GiB for an array with shape (161877, 228942) and data type float64
- Magic + seurat workflow HOT 4
- Running UMAP after Magic - is it valid?
- NaN values when computing the kernel lead to inability to find t-optimal MATLAB.
- MAGIC on RNA + ATAC data HOT 5
- Error: package or namespace load failed for 'Rmagic': HOT 5
- Does it really run in parallel?
- problem running magic HOT 1
- Animate MAGIC error
- Rmagic was removed from the CRAN repository HOT 3
- magic() function error: Stuck on "Calculating PCA..." HOT 1
- ValueError: Length mismatch: Expected axis has 100 elements, new values have 10782 elements
- Name of the package confused with python-magic package
- can not put in more than 1 genes. HOT 5
- Getting 0.0 after imputation
- Option for Computing KNN with some genes, but returning whole graph
- Rmagic HOT 2
- Is it a good idea to run magic on sctransform processed data?
- Is it possible to pass a custom embedding?
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from magic.