kstawiski Goto Github PK

2019_preludium

My PhD work

ainized-projects

binance-trade-bot

Automated cryptocurrency trading bot

brca-classifier

bulksms-android-xamarin

Simple bulk sms application for Android written in Xamarin C#

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

deepsurv

DeepSurv is a deep learning approach to survival analysis.

docker4seq

Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.

hacksig_bladder

A Tidy Framework to Hack Gene Expression Signatures for Bladder Cancer

helpers

R scripts and helpers in the analysis

hippohelper

HippoHelper: Clinically accessible CT-based only delineation of hippocampus using machine learning – a pilot study.

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

jobczyk2020-app

A new tool to predict early-stage bladder cancer recurrence and progression. The application uses advanced artificial intelligence to combine state-of-the-art scales, outperforms them, and is freely available online.

konsta-chatdocs

Chat with your documents offline using AI.

marlon-tools

Automatically exported from code.google.com/p/marlon-tools

mirnaselector

Environment, docker-based application and R package for biomarker signiture selection (feature selection) from high-throughput experiments and other. Initially developed for miRNA-seq (small RNA), RNA-seq and qPCR.

neurexam

Neurexam (Badanie Neurologiczne by Konrad Stawiski) - interactive neurological examination assistant and electronic health record.

omicapp

Shiny Complex App framework with OmicSelector for all purposes

omicselector

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

omicselector-iric

IRIC submodule of OmicSelector

pancreapp

PancreApp: innovative approach to computational individualization of nutritional therapy in chronic gastrointestinal disorders.

panek_tgf

prostate-salvage-dfs

Predict the probability of relapse or reccurence (disease-free survival) after adjuvant or salvage radiation therapy for prostate cancer.

r4ds

R for data science

rstudio-ks

Version of RStudio Server with OmicSelector and other usefull packages for NGS analysis.

sahmeteo

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

seq-pipeline

Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.

smrnaseq-classic

A small-RNA sequencing analysis pipeline

wes_tumoronly

Somatic variant calling workflow for tumor-only NGS