Comments (2)
Sorry for the delayed reply. Here is the path:
alphafold/common/stereo_chemical_props.txt
from alphafold.
Thanks. However the problem is not that I don't know where the file is. The problem is that the program doesn't find the file.
from alphafold.
Related Issues (19)
- Wrong order of conda packages? HOT 2
- --preset reduced_dbs not available flag HOT 1
- Setting working directory in install_on_local.sh HOT 1
- Issue in installing the software HOT 1
- database/pdb_mmcif/raw/*/*.cif': No such file or directory HOT 3
- can't find file to patch at input line 5
- ValueError: Could not find CIFs in /data01/xukui/alphafold/pdb_mmcif/mmcif_files HOT 1
- jaxlib.xla_extension.XlaRuntimeError
- FileNotFoundError: [Errno 2] No such file or directory: '../AlphaLink2/alphafold/all_data/pdb_mmcif/mmcif_files/4fxg.cif'
- Could not find HHBlits database HOT 3
- pip3 install requirement are not compatible
- let pip3 install requirements without versions HOT 1
- Only 1 GPU is used
- download_pdb_mmcif.sh has the rsyncs commented-out, then fails
- Could not find CIFs HOT 4
- Running output
- Unable to initialize backend 'gpu' HOT 7
- Core dumpled
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