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access-anvil-slurm-templates

agat

Another Gtf/Gff Analysis Toolkit

albumentations

Fast image augmentation library and an easy-to-use wrapper around other libraries. Documentation: https://albumentations.ai/docs/ Paper about the library: https://www.mdpi.com/2078-2489/11/2/125

app-testing

astronomy-python

awesome-public-datasets

A topic-centric list of HQ open datasets.

basic-browser

bestpractices_workshop

Draft repo for the "best practices" workshop

bioinformatics-workbook

Bioinformatics Workbook repository

carpentries-incubator.org

configs

Config files used to define parameters specific to compute environments at different Institutions

docs

The open-source repo for docs.github.com

effectorome_h_schachtii

example_checksums

examples

bioinformatic examples

expfactory

software to generate a reproducible container with a battery of experiments

friendsdontletfriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

good-enough-practices

Good Enough Practices in Scientific Computing

h.schachtii_fst

icon-build

Demonstrates converting SVGs into application icons as part of an automated build process

introductory-statistics-with-r

introtohpc

HPC and queue usage class syllabus

jawad-cdk-demo

kurtshowmaker.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

lesson-example

Example lesson using The Carpentries lesson template.

mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

nf-flu

Influenza genome analysis Nextflow workflow

panel

A high-level app and dashboarding solution for Python

pangenome-workflow

A Snakemake workflow for microbial pangenomics analyses.

pearc22-portable-computing-cloud-hpc

https://tacc-cloud.github.io/pearc22-portable-computing-cloud-hpc/