kylebittinger Goto Github PK

abdiv

Alpha and beta diversity measures for community ecology

abxidx

adonisplus

airway-fungi-paper

Data and software for the Genome Biology paper, "Enhanced stringency analysis of fungi from healthy and immunocompromised human airway reveals covariation with bacterial populations"

bilateria

Code for generating figures and statistics for bilaterian animal microbiome project

biocode-review

Code review group - schedule and files

brocc

Consensus taxonomy assignment for short reads (great for fungi)

decision-trees-tutorial

epid674_003_taxonomy

epid674_004_phylogeny

epid674_011_study-design

example-shotgun-analysis

flactrac

Flac music library management

heyfastq

FASTQ utilities in pure python with no dependencies

its_primer_trim

kylemisc

A few utility functions in R

kylesdotfiles

kylesthesis

PhD thesis on mediated spin-orbit coupling in acetylene

lockdown

Check to see if files or variables have changed

metagenomics-workshop

mirix-paper

mouse_vendors_dataset

neonatal-gut-colonization

Analysis source code for "Bacterial colonization reprograms the neonatal gut metabolome"

okfasta

Completely superfluous FASTA utility programs in Python

pheatbuilder

R library to build a heatmap in stages

polyafit

Fit data to a multivariate Polya (a.k.a. Dirichlet-multinomial) distribution

q2-brocc

QIIME 2 plugin for the BROCC taxonomic classifier

qiimer

Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R

setreuler

somanytaxa