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colabfold

Making Protein folding accessible to all!

dc2_oligo

Prediction of oligomeric state of coiled-coil domains

deepcoil

Fast and accurate prediction of coiled coil domains in protein sequences. ​

deepcoil_paper_2018

Scripts and jupyter notebooks necessary to replicate the analyses presented in the DeepCoil paper 2018.

edgegat

graph neural network layer for Deep Graph Library with pytorch backend

edi

graph_toolbox

utilities for processing protein structures

hamppred

Assessing the conformational landscape of the HAMP domain with AlphaFold2

lbs-tools

localpdb

Python package to manage protein structures and their annotations

localpdb-mybinder

localpdb mybinder example

mddesign

Set of scripts that facilitate molecular dynamics aided screening of the models generated with Rosetta and selection of the structural ensembles that can be used as input in protein design simulations.

pipred

Deep learning based prediction of pi-helices in protein sequences

plm-blast

Detection of remote homology by comparison of protein language model representations

plmalign

PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity

plmsearch

PLMSearch enables accurate and fast homologous protein search with only sequences as input

rossmann-toolbox

Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins

samcc_turbo

Software for automatic detection and measurement of coiled coils in PDB structures.

uni-fold

An open-source platform for developing protein models beyond AlphaFold.