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Aleksei Korzhenkov photo

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followers: 2.0 following: 4.0 repos: 23.0 gists: 4.0

Name: Aleksei Korzhenkov

Type: User

Company: NRC Kurchatov Institute

Bio: 2018- research fellow at NRC Kurchatov Institute (Moscow, Russia). 2015-2018: jr. research fellow at Microbial Genomics lab, IKBFU (Kaliningrad, Russia).

Location: Russia

Aleksei Korzhenkov's Projects

biokotlin icon biokotlin

Kotlin realisation of bioinformatics routine operations and file handling.

emirge icon emirge

EMIRGE reconstructs full length ribosomal genes from short read sequencing data.

ephimm icon ephimm

Express Phylogenetic Inference based on Multiple Markers

fastani icon fastani

Fast Whole-Genome Similarity (ANI) Estimation

mapgen icon mapgen

Mapping file generator for QIIME

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

prokka icon prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

prothint icon prothint

Protein hint generation pipeline for gene finding in eukaryotic genomes

russian-grape-cultivars-genotyping icon russian-grape-cultivars-genotyping

Source code and data relating to "SNP-based analysis reveals authenticity and genetic similarity of Russian indigenous grape cultivars" article

seqprep icon seqprep

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

simseq icon simseq

An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site and base specific error, and scripts are provided to train this error model on real datasets. My hope in creating this program is to generate as realistic data as possible to assist in assessing the accuracy of genome assembly tools.

unicycler icon unicycler

hybrid assembly pipeline for bacterial genomes

yamb icon yamb

YAMB: Yet Another Metagenome Binner

zga icon zga

ZGA prokaryotic genome assembly and annotation pipeline

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