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ascnii

View brain images in terminal using ASCII characters

binary

A package implementing the revolutionary BinarySequence for python

brainspace_release

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

checkbids

Wrapper to run the bids validator from command line and validate each file in a root directory.

d-cca

A Decomposition-based Canonical Correlation Analysis for High-dimensional Datasets (JASA-20 paper)

fmriprep_example

Just an example of how to use fMRIprep

freesurfer_example

template/example for using recon-all and inspecting output

gifs

gradiator

command line tool to turn covariance matrices saved in .tsv or .csv files into gradients.

imdown

imdown (pronounce "I'm down") can be used to collect images from a directory tree and put them into a markdown file for markdown to compile to another format using [pandoc](https://pandoc.org/).

intro_to_mricrogl_scripting

Introduction to scripting with MRIcroGL to make nice plots of brain maps with less effort

julearn

Forschungszentrum Jülich Machine Learning Library

junigraph

Command line tool to create visual representations of junifer pipeline as SVG files.

junilog

Extract information from junifer logs and provide them as convenient dataframes.

juniplot

Make some plots from junifer output for initial inspection.

kernelridgeclass

kernel ridge classification for scikit-learn based on KernelRidge regressor

marker2nii

Command line tool to map markers back on the brain.

multi

nimgen

nirust

pandoc-template

A template for using pandoc to create articles

parcmerge

merge two distinct nifti parcellations, intended use is to combine cortical and subcortical parcellations

pymute

Mutation Testing for Python written in Rust

seabornxt

A few handy extension plots using seaborn API.