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Lucas Freitas's Projects

avf icon avf

This is a repository that implements a workflow for whole genome alignment (mainly for bacteria assembly data with a ".fna" file), variant calling and format conversion (VCF to STRUCTURE, Pritchard) setting up the dataset in a suitable format for bayesian clustering analysis.

hybrider icon hybrider

Pipeline for population genetics analysis of putatively hybrid species: Genetic structure characterization and signal SNPs selection

lncinference icon lncinference

This is a repository for collaboration to implement the transcript reconstruction pipeline for long non-coding RNAs using long reads from Oxford Nanopore..

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

primeira_filogenia icon primeira_filogenia

Minicurso de filogenia ministrado durante o evento Semana Portas Abertas PPGBIOINFO em 2023

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

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