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biocgo

Description of relationships between Gene Ontology and Bioconductor

bioplex

R-side access to PPI data from Gygi lab

bioplexanalysis

Applications and downstream analysis of BioPlex PPI data

bioplexpy

Python-side access to PPI data from Gygi lab

cycifdata

Collection of public CyCIF datasets

edaseq

Repository linked to devel version of Bioconductor EDASeq package

enrichmentbrowser

Seamless navigation through combined results of set-based and network-based enrichment analysis

enrichmentbrowserbook

EnrichmentBrowser User's Guide

gha-python-test

Test GHA integration with python dependencies

graphframes

R Interface for GraphFrames

graphviewer

Flexible inspection of experimental data and metadata for nodes and edges of a graph

iseeu

The iSEE Universe

merfishdata

Collection of public MERFISH datasets

merfishdataanalysis

Applications and downstream analysis of MERFISH data

mutanthuntwgs

Bioinformatics pipeline for identification and characterization of mutations in Saccharomyces cerevisiae. Modified to run on SLUM clusters,

pathnet

An R package for pathway analysis using topological information

pathnetdata

Experimental data for the PathNet package

raggedexperiment

rtcgatoolbox

safe

Significance Analysis of Function and Expression

seuratdata

Copy of satijalab/seurat-data but with repository name matching package name

shinyngsreports

The shiny app that accompanies the ngsReports R package

singlecellmultimodal

Single Cell multimodal data scripts for downloading datasets

topaseq

Topology-based Pathway Analysis of RNA-seq data