Comments (3)
Hi @idraktt,
Actually, these annotation columns are not distributed with AnnotSV.
That's why they are not in the README.
Let's have a look at your install.
Can you run these commands:
ls -l $ANNOTSV/share/AnnotSV/Annotations_Human/Users/*
ls -l $ANNOTSV/share/AnnotSV/Annotations_Human/Users/*/*
Else, do you have any annotation file indicated in your configfile that I can't see in your command line?
The "configfile" can be located:
- in the same directory as your input file
- in the installation directory in $ANNOTSV/etc/AnnotSV/configfile
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Dear @lgmgeo ,
Thank you very much for your quick response.
Someone else added Gnomad Annotations on our HPC cluster to AnnotSV installation. Now it is clear from where they are coming.
from annotsv.
Great!
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