liaoherui Goto Github PK

annosine_v2

Accelerating de novo SINE annotation in plant and animal genomes

assemblyevaluator

A simple tool for evaluating a metagenomic assembly

bioconda-recipes

Conda recipes for the bioconda channel.

cherry

Host prediction

cmtw-python

宏基因数据转换为网站需求数据流程(Convert Metagenomics data to web data)

fastq_phred

Perl script for judge the fastq's encoding, whether it is phred33 or phred64.

flask-vue-microblog

flask_microblog

flask_microblog

flye

Fast and accurate de novo assembler for single molecule sequencing reads

gdmicro

GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.

gengraph

A repository for the GenGraph toolkit for the creation and manipulation of graph genomes

gfa-spec

Graphical Fragment Assembly (GFA) Format Specification

graphv

GraphV - An RNA virus strain-level identification tool using long reads and genome graph.

hotspot

HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.

idmil

IDMIL: An alignment-free interpretable deep multiple instance learning (MIL) for predicting disease from whole-metagenomic data

kraken2

The second version of the Kraken taxonomic sequence classification system

laep-python

LAEP(linked-read assembly evaluation pipeline)

liaoherui.github.io

My blog - 2020 version

lrtk

A unified and versatile toolkit for analyzing Linked-Read sequencing data

maep-python

MAEP(Metagenomics Assebly Evaluation Pipeline).This pipeline is a new version of LAEP.

magpurify

Improvement of metagenome-assembled genomes

metacomp

MAEP(Metagenomics Assembly Evaluation Pipeline). This pipeline is a new version of LAEP.

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

msv-python

宏基因数据统计可视化自动分析流程(Metagenomics Stat and Visual)

ncbi-genbank-file-parser

This program can be used to parse the NCBI GenBank file to create a tabulated csv file.

pavian

🌈 Interactive analysis of metagenomics data

phagcn

GCN classifier for phage taxanomy classification

plantbind

A tool for predicting transcription factor binding sites in plants

pstrain

An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data.

quast

Genome assembly evaluation tool