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adcop_max-sum

Code used for experiments presented in the paper "Applying Max-sum to Asymmetric Distributed Constraint Optimization Problems" by Roie Zivan, Tomer Parash, Liel Cohen and Yarden Naveh.

cytomod

Create modules of co-signaling cytokines for analysis of multiplexed cytokine data (e.g. Luminex)

immrep_2022_tcrspecificity

lieltools

python_classes

sete

Sequence-based ensemble learning approach for TCR epitope binding prediction

signicorr

Script for plotting a pairwise correlation matrix as heatmap with annotated p-values, after multiplicity adjustment for multiple hypothesis testing.

tcrdist_knn

tcrgp

TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.

tcrsampler

Sample TCRs according to VDJ gene usage frequency