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agro5431_gwas_exercise

for agro5431

agro932-homework1

agro932-lab

computational lab for AGRO-932

athaliana

R data package for the A. thaliana data set

batools

Tools for Bayesian analysis for whole genome prediction and genome wide association

bglr-r

complexselection

Code and data to identify selection on traits controlled by many loci

dh-production-gs

Genomic selection to optimize the doubled haploids-based maize hybrid breeding

eqtl

gblub

genomic-prediciton

genomicprediction_2018

Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy

genomicselectionsimulator

Genomic Selection Simulator written in python/pyqt

gs

This includes the genome selection scripts for four models, rrBLUP, Bayesian Lasso, random forest and BSLMM models.

gswgbs

R package Genomic Selection with Genotyping-by-Sequencing

gwar

A package for GWA from GBLUP models

hapiden

Efficiency and threshold estimation with various parents in haploid identification based on oil content in maize

leaning

master-thesis

just another repository

miscellaneous-

ml-trait-prediction

Machine learning based traits prediction

mutationbreeding

R scripts for simulation of breeding with mutation

nam

optimaldesign

pbsim

An R package of functions to perform breeding simulations.

roam

statisticalmethodsforomicsassistedbreeding

Slides for short course on 'omics assisted breeding methods

tensorflowbook

tf-genomicselection

Genomic Selection using Neural Networks implemented in TensorFlow

tradaboost

The Python implementation of Tradaboost classifier and regressor