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Pierre Lindenbaum's Projects

bcftools icon bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bigwig icon bigwig

Automatically exported from code.google.com/p/bigwig

biocontainers icon biocontainers

docker containers for bioinformatics on demand using makefiles

bioman icon bioman

manual pages for the bioinformatician

bionode icon bionode

node.js for bioinformatics . Contains a REST server for the UCSC

bioudf icon bioudf

Mysql User defined functions for Bioinformatics

broadgatk icon broadgatk

Official code repository for GATK versions 4 and up

bwa icon bwa

Burrow-Wheeler Aligner

chromosomemappings icon chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

cloneit icon cloneit

github repo for Bioinformatics. 1998 Jun;14(5):465-6. CloneIt: finding cloning strategies, in-frame deletions and frameshifts.

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