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2016-code-bioinfo

Binformatics and IT

4p

Parallel Processing of Polymorphism Panels

a_thaliana_epigenetic_mutants

abyss

de novo sequence assembler

angsd-wrapper

Utilities for analyzing next generation sequencing data

ath_heat_hi-c

Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bamtobw

Convert BAM files to bigWig files with a simple command

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bioinformatics_scripts

Just a bunch of scripts I use for bioinformatics -- feel free to use, reuse, and improve

biopython-cn

Biopython Tutorial Chinese Translation

book

Compiled and pretty version of labs

books

Some useful programming languages' books

cheat

cheat allows you to create and view interactive cheatsheets on the command-line. It was designed to help remind *nix system administrators of options for commands that they use frequently, but not frequently enough to remember.

chipster

Chipster is a user-friendly analysis software for high-throughput data.

cloops2

Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

cls_sever_code

code-2016

LIN

come

COME software version 1

compbio

Python libraries and utilities for computational biology

data

faang-methylation

This repo is to collect the FAANG methylation group's code and pipelines

feelnc

FlExible Extraction of LncRNA

ferret

Ferret: a user-friendly tool to extract data from the 1000 Genomes Project

fish-shell

The user-friendly command line shell.

formattable

Formattable Data Structures

gemini

a lightweight db framework for disease and population genetics.

genomisc

The repository contains a set of miscellaneous scripts for working with various kinds of genomics data.

git_test