liqian-ma Goto Github PK

2020_scworkshop

Code and data repository for the 2020 physalia course on single cell RNA sequencing.

brca_cell_atlas

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

dataanalysis

The lecture slides for Coursera's Data Analysis class

de_screen_analysis

Code to reproduce our analyses from the definitive endoderm screen, April 2019 Cell Reports

deep_learning_papers

A place to collect papers that are related to deep learning and computational biology

genomicspapers

The Leek group guide to genomics papers

ismb.mutsig.tutorial

Instructional material for the ISCB Mutational Signatures Tutorial, July 11 and 20, 2020

jmcglone.github.io

Data for jmcglone.com. Includes customization of Bootstrap 3.0. Blog and pages generated by Jekyll. Hosted on GitHub.

kaggle-solutions

🏅 Collection of Kaggle Solutions and Ideas 🏅

liqian-ma.github.io

music

model-based understanding of single-cell CRISPR screening

pic-seq

practical-python

Practical Python Programming (course by @dabeaz)

pseudospace

rnaseq-analysis

This repository contains the relevant code for the RNAseq and scRNAseq analysis

seurat-to-rna-velocity

A guide to using a Seurat object in conjunction with RNA Velocity

single-cell-ko-screens

Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hill, McFaline-Figueroa et al.

stromal_subclasses

code for data processing and visualisation associated with the stromal subclasses manuscript