ljyanesm Goto Github PK

asub

A unified array job submitter for LSF, SGE/UGE and Slurm

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

cheatsheets

My cheatsheets

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

dkr-awscli-tf

dotfiles

Based on lewagon's dotfiles! Thanks guys :)

dtool-lookup-server

Given a dataset UUID returns a URI to where the dataset is stored

ei-liftover

Repository to transfer gene models across (sub)genomes and check their coherence.

fa2tree

Generate a PHYLIP file from different sized fasta files, the markers must have the same starting position but the end is not important

foodbank

gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

gpumfem

Point Based deformable models implementation, single core, multi-core (OpenMP) and GPU (CUDA)

helm-charts

Helm Charts used to install Kiali resources.

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

ibspy

Python library to identify Identical By State regions

istio

Connect, secure, control, and observe services.

k8s-device-plugin

NVIDIA device plugin for Kubernetes

kat

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

kilombo

Kilobot simulator in C

kmatch

simple aligner for very-high-id genomic sequences, based on kmer anchor lists

kseqcpp

A c++ port of @lh3 kseq.h

lmod_generator

Lmod .lua file generator script

ondacuda

Finite differences wave propagation on the GPU

openidconnect-rs

OpenID Connect Library for Rust

pbrenderer

pc_analysis

pinfish

Tools to annotate genomes using long read transcriptomics data

process_sampler

Generic process sampler

pynb

ranger

A Fast Implementation of Random Forests