Comments (3)
BioinformaNicks
commented on August 17, 2024
@kokyriakidis Just a small question: how did you get xHLA to work on Nanopore fastq's? We're having some trouble currently. Did you use minimap2? Which reference did you use, Hg38 no alt contigs?
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kokyriakidis
commented on August 17, 2024
@BioinformaNicks Try to use hg38-noalt and minimap2.
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BioinformaNicks
commented on August 17, 2024
@kokyriakidis Firstly, thanks a lot! Second, we're using that, but still having some issues on public data. Any particular processing you used? Running their Docker image without any modifications?
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