llerussell Goto Github PK
Name: Lloyd Russell
Type: User
Bio: Applied Scientist at @wayveai Neuroscience PhD
Twitter: llerussell
Location: London, UK
Name: Lloyd Russell
Type: User
Bio: Applied Scientist at @wayveai Neuroscience PhD
Twitter: llerussell
Location: London, UK
Virtual reality running in blender, using single mouse connected via USB using NI VISA driver
Stream data from PrairieView into MATLAB to allow online processing and analysis
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
a generalist algorithm for cellular segmentation
a little utility to generate cellpose rois for use with naparm
Implementation of the constrained deconvolution spike inference algorithm in Matlab
Python implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
python module for image sequence registration
Pseudo virtual reality running in Matlab, using pyschtoolbox, Matrox TripleHead2Go, and a rotary encoder connected to an NI DAQ card
Control and design of two-photon photostimulation experiments
source separation
Electrophysiology and synchronization with National Instruments cards
Read paq file (from PackIO) into python
Software and hardware for control of operant conditioning behavioural experiments
Read YAML files into MATLAB as struct
Python package for analysis of dynamic fluorescence microscopy data
java display window for presenting diffraction phase masks on spatial light modulator connected via DVI. iterates through random patterns
Implements a weighted GS algorithm using Martin Perssons HOTlab DLL
Generates phase masks for display on an SLM using a weighted GS algorithm
Generate SLM phase masks (MATLAB)
Generate SLM phase masks (Python, CUDA)
Calculate the transform required to map 2P imaging space onto SLM space
Calculate the transform required to map 2P imaging space onto SLM space
Standalone python module for performing triggered averaging
Generate stimulus triggered average movies and images from activity imaging data
Tools for processing 2P recordings
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