Comments (8)
It's probably obvious, but just to be clear: I think the option specifying a particular Glottolog release should go in the [admin] section.
from beastling.
What's the status of this? I tried testing it this morning by running a config with glottolog_release=2.6, but it errors out. It looks like the http://glottolog.org/static/download/x.y/tree-glottolog-newick.txt resources don't exist yet? Not trying to rush you, I'm just going through and closing finished Issues this morning and was trying to get a sense for how complete this is.
from beastling.
I noted in the docs that this only works for Glottolog >= 2.7 - which at the moment means just the version distributed with BEASTling. I can't get access to the server from here, so I can't upload newicks for older versions. As it is right now it will work with Glottolog 2.8, though :)
from beastling.
Do you mean that http://glottolog.org/static/download/2.8/tree-glottolog-newick.txt is supposed to exist right now? Or just that it will be automatically generated when 2.8 is release?
from beastling.
It will be created when Glottolog 2.8 is released and by then will be downloadable by BEASTling. 2.8 isn't out yet.
from beastling.
Right, got it. So basically the feature is fully implemented, but the downloading of versions not packaged with BEASTling cannot be properly tested yet (i.e. using an actual HTTP request instead of a mocked up one) due to non-availability of old files because you can't get to the server?
from beastling.
Genau!
from beastling.
Alright, I will close this then since the feature is implemented, but I look forward to doing a "real" test once you get access to the server again. :)
from beastling.
Related Issues (20)
- CLDF dataset loading pains HOT 19
- "The Yule model is not particularly suitable for linguistic analyses, however it is currently the best BEAST has to offer." HOT 7
- ASR tests fail HOT 33
- log_params duplicates log entries. HOT 1
- Refactor beastrun tests? HOT 6
- Unify file handling HOT 2
- Remove the dependency on clldutils HOT 2
- Remaining synonym issues
- Hack BEAST XML using DOM notation? HOT 2
- OSError: File name too long, instead of being interpreted as list HOT 1
- Make TreePrior.add_state_nodes use state instead of beastxml
- LogNormal Relaxed Clock parameterized by “variance”, is actually “stdev in log space”
- PyYAML, an indirect dependency, needs Python>3.4 HOT 4
- Document and Unify Exit Codes
- Should base-clocks/models/priors be abstract?
- Report could use slightly more clever templating
- Should __distribution__ be a property of all clocks?
- 'BinaryModel' object has no attribute 'share_params' HOT 11
- Binary CTMC binarised=True
- BEASTling does not clean up concept names with commas properly
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from beastling.