Comments (4)
lorenzo-rovigatti
commented on August 13, 2024
If you look at the last part of the log file you can see that the simulation crashes with an "out-of-memory" error. The box size you are using is most likely too big,
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ErikPoppleton
commented on August 13, 2024
To follow up, the 10 configurations you're seeing are from the 10k Monte-Carlo steps that the relaxation protocol on the webserver begins with to remove excluded volume problems. If you have specific problems with the webserver version, you should send an email to the address listed in the FAQ page, they can help more with webserver-specific problems.
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Boyu-Liu03
commented on August 13, 2024
Oh okay so sorry about the confusion then. Thank you all so much for the quick response!
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Boyu-Liu03
commented on August 13, 2024
I will be using the email address moving forward!
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Related Issues (20)
- Can a backbone connection be approximated with mutual harmonic traps? HOT 7
- [BUG] analysis/tests/test.sh missing files HOT 7
- How to devide the HB ENERGY into each DNA molecules HOT 2
- [BUG???] get_vectors_from_quat() different than ouldridge(2011, p.152) phd thesis and rapaport (1985) HOT 1
- > Thanks for the report! That’s a bug on my part but I won’t have a computer for the next few weeks. You can get around it by adding the line `use_average_seq = 1` to your input file. HOT 11
- [BUG] Insufficient Oxpy Cmake Error Message HOT 3
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- observable structure factor not found HOT 1
- [BUG] oxpy - FFS Simulation Type Fails to Log Correctly When Running Consecutive Processes HOT 1
- [BUG] Rye Reader method `inbox` does not move all points inside the box HOT 1
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- oxDNA analysis tool: duplex angle plotter HOT 3
- [BUG] Build failure with cuda 12.5.0 HOT 1
- Compute energy without running the simulation HOT 2
- [DOCUMENTATION] Sequence Dependence of Cross-Stacking HOT 1
- [BUG] Installation Error when running 'make install' HOT 4
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