louiejtaylor Goto Github PK
Name: Louis J Taylor
Type: User
Bio: Hunting viruses at the University of Pennsylvania.
Twitter: Louviridae
Name: Louis J Taylor
Type: User
Bio: Hunting viruses at the University of Pennsylvania.
Twitter: Louviridae
Conda recipes for the bioconda channel.
Snakemake workflow to dump TCGA reads, map to target genomes, and summarize alignments
Looks for prokaryotic RBS upstream of ORFs given .gb files
A hands on forking, cloning, pulling, pushing, merging tutorial.
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Snakemake workflow to download and/or align reads to targets and produce useful outputs.
A k-mer-based approach for masking low-complexity nucleotide sequences.
A method of assessing sequence complexity based on kmer frequencies
Conda recipe for komplexity (https://github.com/eclarke/komplexity/)
A proof-of-concept for the display of 3D data using the LeapMotion controller.
Bioinformatics pipeline for nanopore sequencing data
A web interface & Python tool to design knockouts in viruses with overlapping genes.
Sunbeam extension to reproduce key results from Bahram et al 2018 (PMID: 30069051)
Sunbeam extension
Kaiju metagenomics classifier for Sunbeam
Sunbeam extension to run kraken2
Sunbeam extension to reproduce key results from Lewis et al 2015 (PMID: 26468751)
Sunbeam extension to reproduce key results from McCann et al 2018 (PMID: 29761040)
Sunbeam extension for running MetaPhlAn
Sunbeam extension to run minimap2
Generates a final report, with figures, from a Sunbeam run
Sunbeam extension to run RGI (Resistance Gene Identifier)
Sunbeam extension to select coassembled contigs with homology to a particular blast database
Selecting contigs after BLAST annotation
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.