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ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

baidupan-rapidupload

百度网盘秒传链接转存/生成/转换 网页工具 (全平台可用)

cho_sirna_finder

Find candidate siRNAs for CHO transcripts

crawler

K 哥爬虫代码分享，JS 逆向，爬虫进阶。关注公众号：K哥爬虫

crisprseq

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

deepmircut

deepmircut_data

Dataset Generation Scripts for DeepMirCut

dicer_gym_motif

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

exoseq

Please consider using/contributing to https://github.com/nf-core/sarek

lineardesign

The LinearDesign mRNA design software.

m3u8-downloader

A tiny program to download m3u8 by ffmpeg.(Stop updating permanently)

mfcdudownloadcodegenerator

用于百度网盘的标准提取码生成器

pdf_add_bookmark_semi

基于Python半自动化给PDF加书签

popgen

Population genetics analyses

pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

rapid-upload-userscript

秒传链接提取脚本, 使用typescript + webpack重构

ribotree

Pipeline to make a phylogeny from ribosomal proteins pulled from microbial genomes

rna_seq_biotrainee

DEG analysis and KEGG/GO enrichment analysis

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

robotframework-imaplibrary

Mail Library for Robot Framework

scripts

Scripts developped over time and (sometimes) still usefull

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

sgrna_design

sifi21-

smallrnaseq

Scripts for small RNA analysis.

smallrnaseq_dmnfarrell

small rna-seq analysis package

smrnaseq

A small-RNA sequencing analysis pipeline

snakemake-qiaseq-mirna2

Snakemake pipeline for miRNA and piRNA quantification from QIAseq miRNA Library Kit libraries

test-datasets

Test data to be used for automated testing with the nf-core pipelines