lshapiro31 Goto Github PK

2014-11-07-harvard

Software Carpentry workshop at Harvard

amplicon_sequencing_pipeline

Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.

annotation-comparison

Scripts to compare bacterial genome annotations

awesome-bash

A curated list of delightful Bash scripts and resources.

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

bioawk

BWK awk modified for biological data

bioawk-tutorial

cheatsheets

RStudio Cheat Sheets

cucurbit.insect.microbiome

16S analysis of cucurbita beetle + bee microbiomes

datacarpentry.github.io

The Data Carpentry website repository

evolution_game

Game to teach concepts about mutation, diversity, selection, and evolution

formatconverters

gh5.expansin.phylogenetics

github-slideshow

A robot powered training repository :robot:

learngganimate

A living, breathing community exploration of the gganimate R package. A rOpenSci #ozunconf2018 project

microbemiseq

Set of useful functions and scripts for analyzing amplicon Miseq data.

morning_sting

Sharing with friends

mtbdrugresistance

The population genetics of drug resistance in Mycobacterium tuberculosis

mustache

A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.

phyloscanner.r.utilities

Utility functions for deep-sequence phylogenetic analyses at the population level with phyloscanner

plant_path_meta

popgen-notes

Population genetics notes

popgen-stats

Scripts to calculate population genetics statistics

purrr

A functional programming toolkit for R

r-ecology-lesson

:notebook: Data Carpentry R lessons on ecology.

stringr

A fresh approach to string manipulation in R

syllabus

util

Helpful scripts for downloading, processing, and manipulating 16S data

vizbi-2015

Sample data and notebooks for VIZBI 2015 tutorial session

w1.unix.command.line

materials for the workshop on UNIX command line