lucapinello Goto Github PK

2016_project_4

Pseudo-WGS variant calling for common cell types aggregating ChIP-seq, RNA-seq and DHS from ENCODE and Roadmap Epigenomics data

alexa_grinder

Voice controlled grinder with precise timing using HS100 and amazon alexa

ambi-tv

a flexible ambilight clone for embedded linux

artisan_peripage

bayesian-deep-learning-demystified

In which I try to demystify the fundamental concepts behind Bayesian deep learning.

beans_autodoser_acaia

beastroaster

bioconda-recipes

Conda recipes for the bioconda channel.

bioutilities

Python library to streamline the analysis of genomics data

bluepy

Python interface to Bluetooth LE on Linux

bsub_jupyter

Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The name of the connection can be used to reestablish the connection later or to terminate it.

c2dmprototype

This repository is a collection of applications that was put together with the sole purpose of demonstrating the basic functionality of Google's Cloud to Device Messaging (c2dm)

cluster_ensembles

A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.

cripsr_nanocourse_hms

Material for crispr nanocourse for harvard medical school

crisporwebsite

All source code of the crispor.org website

crispr-meets-docker

Docker images and IPython notebooks (bash kernel) for common CRISPR bioinformatic analysis: CRISPOR, CRISPResso and MAGeCK

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

eclair

Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.

epilogos_spritely

freshroastsr700_phidget

Extension of the freshroastsr700 to drive PID of the SR700 with an external Phidget

goshifter

GoShifter

haystack

Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

kaka_pid_control

make_video_from_folder

Create a video from a folder with images

mim

Motif Independent Metric

nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

odsc_neural_nets_11-04-17

Talk "Deep Learning From Scratch Using Python" to be delivered at ODSC West on November 4, 2017

parallel-tutorial

Parallel computing in Python tutorial materials

phidget22python

Phidget22Python adapted to pip and originally from https://www.phidgets.com/downloads/phidget22/libraries/any/Phidget22Python

plotly.js

Open-source JavaScript charting library behind Plotly and Dash