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16s-dada2

Snakemake pipeline for amplicon sequencing using dada2

2022.1-faes-tutorial

JupyterBook for QIIME 2 FAES January 2022 workshop

adv360-pro-zmk

Production repository for the all-new Advantage360 Professional using ZMK engine

agnostos-wf

ameta

Ancient microbiome snakemake workflow

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

ancientmetagenomedir

Repository containing lists of all published ancient metagenome samples (and related)

anvio

An analysis and visualization platform for 'omics data

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

btools

A set of R functions that help faciliate a lot of tedious processing

causal_microbiome_tutorial

Causal inference framework for environment-microbiome data applied to American Gut data.

comppls

An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data

covid

Pipeline to get to detect covid-19 strains from Miseq reads

csb-du9swc

dadaist2

🎨 dadaist2 - Highway to R

dadasnake

Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake

ganttrify

Create beautiful Gantt charts with ggplot2

gazel-article

geek

Created with CodeSandbox

genome_assembly

ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

js4ai

Collection of Javascripts for Adobe Illustrator

krakentools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

metagmisc

Miscellaneous functions for metagenomic analysis.

microbiomemarker

R package for microbiome biomarker discovery

mirlyn

nat_com_answer_letter

Code use to analyse data from PRJNA632856. Batch and R scripts to generate figures.

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

oneliners

Useful bash one-liners for bioinformatics.