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baseline-gp

caffe

Caffe: a fast open framework for deep learning.

data

data for spacejam2

discrover

Discrover: discover discriminative sequence motifs

discrover-galaxy

A Galaxy module to run Discrover

discrover-packages

Distribution package files for Discrover

gpc

Gaussian process code in C++ including some implementations of GP-LVM and IVM.

gpy

Gaussian processes framework in python

motifrg

Clone of and fixes for bioconductor package motifRG

opencv

Open Source Computer Vision Library

powerline

The ultimate statusline/prompt utility.

run_scvi

Python CLI for scVI

run_zinb-wave

Front-end code to run ZINB-WaVE from the command line

samplefq

Sample sequences without replacement from FASTA or FASTQ files

saw

scanpy

Single-cell analysis in Python. Scales to >1M cells.

sci

Gentoo Science Overlay

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

scvi-tsv

A deep generative model for gene expression profiles from single-cell RNA sequencing

spatial-transcriptome-deconvolution

Index of repositories for code to perform spatial transcriptome deconvolution.

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

st_viewer

The ST viewer is a tool to visualize spatially resolved gene expression data on top of cell tissue figures with the correct location.

symbolic

Symbolic expressions in C++

vizgen-cellxgene-anndata

wholebrain

R package for segmentation, registration and generating web-based brain atlases from microscope images

zinbwave

Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave