Comments (1)
We have addressed these and related concerns on the project website.
http://bamm-project.org/likelihoodmodel.html
For the first question (rate shifts on extinct branches), the short answer is that this doesn't matter in practice, and there is no way to address this without paleo data. Moreover, all other methods that have been proposed for studying rate shifts make the same assumption, so it's a more general issue.
For the second question (arbitrary swiveling of nodes), we have incorporated a solution into the new version of BAMM (detailed on http://bamm-project.org/likelihoodmodel.html).
from bamm.
Related Issues (20)
- node labels cause problems in plotting HOT 4
- Support non-ultrametric trees HOT 1
- Pick lambdaInit0 from prior
- New add event proposal to pick branches HOT 2
- Simplified control file HOT 5
- Time-flip proposal prior
- Write MC3 documentation
- BAMM installation documentation HOT 3
- Analyze multiple trees HOT 1
- Top information when running BAMM HOT 1
- Add version information to bamm program header HOT 2
- getBestShiftConfiguration HOT 1
- threads not working on Ubuntu 14.04 LTS HOT 20
- E0 initializations
- high resolution clock for seed HOT 2
- Feature request: the ability to turn off density dependence HOT 9
- The option validateEventConfiguration gives wrong prior distribution HOT 1
- ensure compatibility of lambdaIsTimeVariablePrior and updateRateLambdaShift
- plot HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from bamm.