Comments (3)
requirements.txt
Feel free to see if this works for the time being - I believe it has some extra packages that are not required. I will update it once I do a more thorough test.
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Hi, was this requirements file ever reduced down?
I'm trying to get CLAM running in Docker so I can utilise multiprocessing on my Windows desktop
from clam.
Hi, I don't think they updated the requirements file but the one attached above works well for me. However I'm not working on the datasets they used, so can't comment on the reproducibility.
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Related Issues (20)
- Questions about threshold parameters
- Datasets in configuration file and GPU Training Step
- KeyError: "Unable to synchronously open attribute (can't locate attribute: 'patch_level')" HOT 1
- Adapting data loader to multi class & multi label
- Problem running split in CONCH/CLAM environment
- expand sdpc format HOT 3
- vsi format
- Color Issue in Heatmap File C3L-01663-21_0.75_roi_0_blur_0_rs_1_bc_0_a_0.4_l_1_bi_0_0.2.jpg in heatmap_production_results\HEATMAP_OUTPUT\LSCC Folder
- heatmap HOT 1
- Poor removal of small holes in pathological tissue, how should the parameters be adjusted
- Heatmaps are patchy and not smooth HOT 1
- Extracting Raw Patches (.jpg / ./png)
- Attention maps for multiple predictions
- The first step to get the segment , the margin is too large
- About the custom_downsample parameter in extract_feature_fp.py
- openslide.lowlevel.OpenSlideUnsupportedFormatError: Unsupported or missing image file
- 1 to 1 correspondence between slide (*.svs) and patches/stitches??? HOT 1
- model types 'clam_sb', 'clam_mb', 'mil'
- Identify tumor regions
- Heatmaps visualization
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