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alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

blastparser

This program is used for parsing .blastp files

ccremover

:exclamation: This is a read-only mirror of the CRAN R package repository. ccRemover — Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data

cellannotator

Automated marker-based annotation of cell types

cellannotatorseurat

Annotate cells/cluster based on a marker list

cellbender-pipeline

cellphonedb

celltagr_grna

This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.

conos

R package for the joint analysis of multiple single-cell RNA-seq datasets

docker-r-h2o-tidyverse

Personal Docker image to host used R packages used for Lazy Trading

docker-shinyapp

Docker container of shiny app

enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

enrichplot

Visualization of Functional Enrichment Result

for_test

gps

ancestry

miniseqtoolbox

Mini toolbox for analysing DNA sequences

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

n50

This program will calculate N50 for a genome assembly

network_analysis_snakemake_pipeline

A snakemake pipeline for performing network analysis

orthologfinder

Look for orthologs for 2 or 3 sequences using the reciprocal blast method

pic

Pictures

pixy

Software for painlessly estimating average nucleotide diversity within and between populations

rparalog

Rparalog is program for identifying paralogs

scrublet_savefig

add save fig function

seurat

R toolkit for single cell genomics

singularity-r-tximport

R in a Singularity container

super_class

For python exercise of writing super_class

test