Type: User
Company: Interfaculty Bioinformatics Unit, University of Bern
Bio: Bioinformatician and Data Scientist. Expertise in omics applications (e.g. metagenomics, RNA-Seq, scRNA-Seq) using CLI, R, Python, Snakemake, Bash etc.
Location: Bern
bioinformaticstools
A collection of bioinformatics tools using python, R and bash.
cardio_train
Short machine learning project
cnn_16s_classification
etl
genome_assembly_pipeline
Snakemake pipeline for assembling and annotating bacterial genomes from NGS paired-end data.
hypericum_analysis
This analysis is published in: Howard C, Hill E, Kreuzer M, Mali P, Masiero E, Slater A, Sgamma T (2019) DNA Authentication of St John’s Wort (Hypericum perforatum L.) Commercial Products Targeting the ITS Region; Genes 10(4), 286 This file consists of the metabarcoding analysis after the querying the reads to the NCBI database. The blast output was parsed with MEGAN. The starting data is the file __specieslist.ncbi.txt__.
meta-genomisc-snakemake
microbial-assembly-exercises
BC2Bio assembly exercise
mlcv
Machine Learning for Computer Vision course
shiny_deployment_example
shinyapps
soil_metagenomics
website
Code and files for the main nf-core website.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
