manavalang/rescons

ResCons, a GUI software suite, assists in residue conservation analysis

rescons's Issues

ResCons can't import clustalo_embl_api

On ubuntu 16.04 using Python 2.7.12 (default, Nov 19 2016, 06:48:10),
and dependencies installed on a virtualenv:

• biopython
• clustalo
• xmltramp2

As stated in the README, file ResCons.py was copied to bin directory and Rescons_Files was copied to lib/python2.7/site-packages/.

When trying to run ResCons.py I get the following error:

Traceback (most recent call last):
  File "ResCons.py", line 65, in <module>
    from ResCons_Files.clustalo_embl_api import clustalo_api            # to run clustal omega through EMBL webserver
ImportError: No module named ResCons_Files.clustalo_embl_api

Any pointers to solve this error?

Unable to generate results for a large dataset

Hello,
I have MSA file of 93 thousand protein sequences. I wanted to generate mismatch excel sheet for my dataset but ResCon seems to crash for a large dataset. The error suggests there might be memory issue.
I am using ResCon on Windows.
Many thanks
Shubhangi