maoyeh Goto Github PK
Name: Mao Ye
Type: User
Company: @Salk
Bio: PhD @ ZJU, Postdoc @ UCSD, Salk
Mao Ye's Projects
allenccf
Tools to work with Allen Inst CCF data in matlab
bonsai.miniscope
Bonsai package for controlling headborne, calcium imaging miniscopes
caiman
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
caiman-matlab
Complete Matlab pipeline for large scale calcium imaging data analysis
cnmf_e
Constrained Nonnegative Matrix Factorization for microEndoscopic data
cocoframer
COmmon COordinate FRAMEwork in R
data_synchronisation
Example code for synchronising pyControl behavioural data with pyPhotometry recordings.
deeplabcut
Markerless pose estimation of user-defined features with deep learning for all animals, including humans
deeplabcut-1
A Bonsai interface for real-time markerless pose estimation using DeepLabCut
deeplabcut-workshop-materials
Workshop material for using DeepLabCut
ecallen
Python package for easy interaction with the Allen Institute for Brain Science
fade
Fast automated blind deconvolution of multi-phasic EPSCs.
fca
For analyzing fiber photometry.
fpga-scratch
Scratch code for Elbert V2 FGPA development board
neuroanalysis
Modular analysis tools for neurophysiology data
neuromatic
NeuroMatic
normcorre
Matlab routines for online non-rigid motion correction of calcium imaging data
opencv
Open Source Computer Vision Library
patch_data_ana
Analyze patch clamp data and make figures
psyc-neu-231
PSYC-NEU 231 Tools for Experimental Data Analysis
pyabf
A Python interface to files in the Axon Binary Format (ABF)
pystim
A stimulus program for visual neuroscience experiments built on psychopy
ramsden_mec
Registration pipeline for Allen Brain Atlas data
scalable-brain-atlas
Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)
single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
slicer
Multi-platform, free open source software for visualization and image computing.
stimfit
A program for viewing and analyzing electrophysiological data
stytra
A modular package to control stimulation and track behaviour
swhlab
Python tools for analysis of whole-cell patch-clamp electrophysiological data
tracking-plugin
Open Ephys plugins for tracking experiments
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