Comments (1)
matentzn
commented on July 20, 2024
Do not worry about Mondo so much - for that we have the Mondo mapping pipeline which does some processing.. We care about all the other ontologies aside from Mondo. For Mondo, we just copy the SSSOM tables from the Mondo repo, nothing else.
Not sure what went wrong with prefixes though: we are using bioregistry to infer expansions, and EMAPA is among them:
https://github.com/mapping-commons/sssom-py/blob/master/sssom/sssom.external.context.jsonld#L108
Maybe you need to trace down why sssom-py does not look at these?
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Related Issues (16)
- Integrate other mapping sources (drop links)
- Capturing confidence levels from the side of the registry
- Basic progress monitor for mappings HOT 3
- Include Meddra mappings from Open Targets
- Change default license HOT 1
- Review general mapping rules for diseases and phenotypes HOT 6
- Rules for disease mappings
- Add mapping sets to disease mapping commons
- Slurp Medgen HPO mappings HOT 1
- Ingest Mondo mappings
- Ingest DO, ORDO, OMIM, NCIT mappings HOT 17
- Document ICD10 mapping sources HOT 3
- Ingest OMOP2OBO mappings HOT 3
- Build ingest pipeline for SNOMED-ICD10 mappings HOT 3
- Boomer pipeline prototype implementation for Mondo ICD10CM mapping HOT 4
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