mar111tin Goto Github PK

10xcx

ascat

ASCAT copy number R package

bam2fastq

converts bam files into paired fastq files

biodockers

containers for bioinformatic research

cellrangersnake

snakemake pipeline for preprocessing 10x-NGS-data using cellranger

clarapage

clarapi

cnvascat

snakemake implementation of the ASCAT-Refphase CNV workflow

cnvvalidation

workflow for validation of CNV results and subsequent VAF adjustment in SNV data

datadockers

collection of base docker images for datascience

deepseqvali

pipeline for validation of known mutations using deep sequencing

digiwest

tools for working with Digiwest data

dockersnake

implementing snakemake with docker

ebscore

filterbam

creates a set of filterbam files for use in IGV from mutation list and original (LARGE) bam files

flask-rest-api

test repo for creating a REST-API with Flask and SQLalchemy

flask-tuto

first flask project

franziweb

Franzis Webpage

fullstackopen

Following the FullStackOpen tutorial on https://fullstackopen.com/

go-test

first test repository for golang

hdrdetect

bioinformatic tool for the detection of false-positive mutations in bam-files caused by mapping artefacts

jsonapi

first API (Udemy Course)

lumipy

code collection and tools for working with Luminex data

mawktools

collection of mawk tools for ultra-fast bioinformatic data processing

mycnv

CopyNumberVariation detection in WES data using coverage and heteroSNP

panelseq

little tool for creating sample sheets from a sequencing excel

primertools

(optionally containerized) tools for creating primers, searching and indexing primers

projectsceleton

Sceleton project folder as a template to start work from

pubmap

force-directed graph for publication interaction

pymed

PyMed is a Python library that provides access to PubMed.