Comments (1)
nvpatin
commented on September 28, 2024
I am having a similar problem with ktimporttext. The text file looks as follows:
fraction superkingdom phylum class order family genus species
0.006989827418079846 Eukaryota Viridiplantae:Chlorophyta Prasinophyceae Mamiellales Mamiellaceae Ostreococcus Ostreococcus lucimarinus
0.00264960273269132 d__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodobacterales f__Rhodobacteraceae g__LGRT01 s__LGRT01 sp001642945
0.002089908775655044 d__Archaea p__Thermoplasmatota c__Poseidoniia o__Poseidoniales f__Poseidoniaceae g__MGIIa-L1 s__MGIIa-L1 sp000246735
0.0019214235844647422 d__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales f__Halieaceae g__Luminiphilus s__Luminiphilus sp000169115
And the output html file has all the hits to domain Archaea (which all belong to one order, Poseidoniales) showing up at the domain level with Bacteria and Eukaryota:
This is the first time I've encountered this problem and have used ktimporttext many times on similar taxonomy files!
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