Comments (3)
toddknutson
commented on September 28, 2024
I may have solved my own issue -- or at least I found a workaround. All of my queries assigned to "0" are truly unclassified, whereas my queries assigned to "1" are classified as "unassigned root." I looked up NCBI's taxonomy and there is a top level for "unclassified" which has a taxon ID number: 12908. Thus, if simply change all my "0"s to "12908", I get the Krona chart I'm looking for.
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ondovb
commented on September 28, 2024
It looks like this has actually been broken since 2.5. I just pushed 2.6.1 with a fix.
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toddknutson
commented on September 28, 2024
Great, thanks! Version 2.6.1 now works as I originally wanted: a "0" is called "no hits", and a "1" is called "unassigned root". If by chance you had a taxon ID of "12908" in your list, that would be called "unclassified sequences." Thanks again for the fix!
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Related Issues (20)
- ./updateTaxonomy.sh: line 287: make: command not found HOT 3
- Missing scripts in 2.8.1 HOT 2
- Use of Krona within another project HOT 1
- ktClassifyBLAST error
- Don't display wedge for No Hits (and no matches)
- Exporting raw data from krona plot HOT 1
- ktImportKrona
- Some levels are missing HOT 1
- ploting Krona with multiple levels
- Updating dependencies HOT 1
- Installing KT in Windows HOT 3
- how is the best hit selected for each read in a BLAST tabular output?
- Snapshot opens new tab but nothing ever loads... HOT 1
- What does Other and Unclassified categories stand for in the kronagram?
- Taxonomy level skipped
- how to prepare custom taxonomy.tab
- Coloring Krona with score
- getting sequence id from supplementary file
- KrakenUniq report analysis with Krona: taxonomy ID not found in local database
- KtImportText: Can't locate KronaTools.pm HOT 1
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