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assembly_formation_model

MATLAB code for simulating the development of spontaneously active neural assemblies. See corresponding journal article "Emergence of spontaneous assembly activity in developing neural networks without afferent input." M. A. Triplett et al. (2018). PLoS Computational Biology, 14(9): e1006421.

bataro

Bayesian target optimisation for high-precision holographic optogenetics

circuitmap

Bayesian synaptic connectivity inference and neural waveform demixing for two-photon holographic optogenetic data

deepcgh

A Python/TensorFlow implementation of DeepCGH, a framework for unsupervised deep learning-based computer-generated holography.

neurocaas

IaC codebase for the NeuroCAAS Platform

psc-detection-dist

Distribution of code implementing the Bayesian PSC detection algorithm described in Merel et al, J. Neuro. Meths., 2016.

retinotectal_transform