Comments (3)
MikeDMorgan
commented on August 10, 2024
I think this could be a field-specific analysis, and hence I would encourage you to create your own functions that take Milo/DA results and compute this. Milo is designed to facilitate DA testing, and it is necessary to be quite strict with what functionality is contained in the package because it also needs to be maintained (Heng Li I am not).
from milor.
DarioS
commented on August 10, 2024
You mean Aaron Lun? Heng Li hasn't maintained and improved bwa in years.
from milor.
MikeDMorgan
commented on August 10, 2024
Heng Li's comment on software devel: http://lh3.github.io/2019/03/11/on-maintaining-bioinformatics-software
(Also, I'm sure both Aaron and I would gladly agree that I'm not Aaron having worked with him for the best part of 3 years).
from milor.
Related Issues (20)
- Prevention of Neighbourhood Merging of Similar Cell Types into Neighbourhood Groups HOT 1
- Cell type is lost during annotateNhoods HOT 5
- Function Not Found Error HOT 3
- nhood size distribution: some neighbourhoods have over 2000 cells HOT 4
- Progress Bar for GLMM HOT 6
- object 'as.SimpleList' of mode 'function' was not found when running calcNhoodDistance HOT 2
- Multiple comparisons gives identical results by using model.contrasts HOT 12
- Does MiloR take into account that the two compared conditions have different number of cells? HOT 2
- Log10 FC or Log2 FC? HOT 1
- How to use MiloR after subsetting the cell types from total cell types? HOT 4
- Direction of test for logFC calculation HOT 1
- Existence of 2 tuitorials for the "Differential abundance testing with Milo - Mouse gastrulation example" HOT 3
- Import precomputed graph HOT 7
- makeNhoods graph refinement (issue with isolated vertices) HOT 4
- No Significant Neighbourhoods Result is Error HOT 1
- Mass cytometry data HOT 1
- MiloR in spatial transcriptomics data HOT 1
- Gene expression testing of only DA neighborhoods within group?? HOT 3
- Can you implement a complete miloR in python ? HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from milor.