marrip Goto Github PK

adventure

Code for a textbased Adventuregame

ansible_test_project

Setting up ansible test env

autopore

Suite of CWL workflows for nanopore de novo assembly.

bed_taste

Simple CLI to retrieve bed files for A2G protocol

bioconda-recipes

Conda recipes for the bioconda channel.

biotonne

Dockerfiles and additional files to dockerize specific bioinformatic tools.

bsc_amplicon

Bash and R scripts used to analyze amplicon data

bwamem_benchmark_kreuzotter

Benchmarking bwamem on slurm cluster

cnv_snakes

containers

Bioinformatics containers

gene_list_svc

Database service server to get complete gene/region lists for different diagnostics

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nerdschool1

Exercises 1/10/2019

pronto

rePort geneRator fOr iNpred Tumor bOards

slurm

Slurm: A Highly Scalable Workload Manager

test-datasets

Test data to be used for automated testing with the nf-core pipelines

test_xevi

verktoykasse

Containerized bioinformatic tools

wgs_a2g_konigskobra

WGS workflow to generate results for the ALL2Gether protocol

wgs_mgi_natter

Snakemake workflow to process sequencing data from MGI Instrument

wgs_somatic_cnv_sv_viper

Workflow to call structural and copy number variants in somatic whole genome data

wgs_somatic_pon

Create panel of normals for different tools

wgs_somatic_snp_viper

wgs_std_viper

Simple workflow to map WGS data to reference genome according to GATK best practices

wgs_trio_natter

Snakemake workflow to process WGS trio data from MGI instrument

wgs_vcf_anno_db

MongoDB database backend to hold annotated vcf data for data inspection.

wts_fusion_natter

Analysis workflow for RNASeq-data