pretrained code

[lrt666]

pretrained code

[marshuang80]

Hi there, you are seeing this error because the config is missing the "norm" argument under model. I have updated chexpert_pretrain_config.yaml with that configuration (link). Can you please check if that solves the problem?

[lrt666]

Hi , I still got this error. If I update the config do I need to reinstall the package?

[marshuang80]

Which config file are you using?

[lrt666]

pretrained config

[lrt666]

I just run the pretrained code and I don't find which config I am using.

[marshuang80]

Can you confirm that you've pulled the lastest changes and this is the commands you ran: python run.py -c ./configs/chexpert_pretrain_config.yaml --train

[lrt666]

No, I am just running the 'Load GLoRIA pretrained models' and I got this error.

[lrt666]

If I run the commends 'python run.py -c #./configs/chexpert_pretrain_config.yaml --train' and I will get error:

Is this normal?

[marshuang80]

You'l need to modify CHEXPERT_DATA_DIR in constants.py (link) to point to your chexpert data directory to avoid the "FileNotFoundError"

[marshuang80]

Thank you for helping me debug the error. I've made some changes - can you pull the repo again and try load GLoRIA pretrained models again?

[lrt666]

Solved with the previous error but there is a new error:

[marshuang80]

Made new changes - how about now?

[lrt666]

still got error:

[marshuang80]

My apologies, how about now?

[lrt666]

got error:

[marshuang80]

How about now

[lrt666]

Is this a typo or other error?

[marshuang80]

typo, thank you for your help

[lrt666]

Thanks for your patience and can I know where to download chexpert?

[marshuang80]

Please refer to this link for more information on CheXpert: https://stanfordmlgroup.github.io/competitions/chexpert/

Just a heads up - the CheXpert reports are still under review to ensure HIPPA compliance and patient privacy; hence not publicly accessible yet.

[zyt0211]

Thank you for your outstanding work! May I ask when master_updated.csv will be published, or can you tell me what parts it consists of? Looking forward to your reply!