plot_group_stats() got an unexpected keyword argument 'plot_kws'

[martinjzhang]

plot_group_stats() got an unexpected keyword argument 'plot_kws'

[milospjanic]

works now, thanks!

[martinjzhang]

@KangchengHou could you help? Thanks!

[KangchengHou]

@milospjanic looks like it is a version mismatch issue.

Can you type

scdrs.__version__
??scdrs.util.plot_group_stats

to provide us some information on the scdrs version you are using?

To have a quick fix, I suggest installing scdrs=1.0.3 or remove plot_kws when calling plot_group_stats

[milospjanic]

scdrs.version
'1.0.2'

[milospjanic]

Removing plot_kws works but then i cant adjust vmax for the coloring, and the graph ends up with no color (as the FDR proportions are lower)

[milospjanic]

and also the legend cover the top part of the graph

[KangchengHou]

can you try reinstalling scdrs=1.0.3 so you can have more control on the figure aesthetics via plot_kws

[milospjanic]

How do i get 1.0.3, pip install scdrs==1.0.3 doesnt work

[milospjanic]

Also via cloning the repository doesnt work

[KangchengHou]

pip install git+https://github.com/martinjzhang/scDRS.git

[milospjanic]

Thanks with 1.0.3 it looks good as the bar is above the graph, but still I cant change vmax to 0.05 to get some color on the graph, changing vmax in plot_kws doesnt change it

[KangchengHou]

can you try setting cb_vmax? the full option is available at

scDRS/scdrs/util.py

Line 492 in 6ee2161

plot_kws : Dict