Comments (2)
Hi there @theKineto,
You should be able to do it by changing the alpha_var and beta_var variables (in your .config file or passing it by command line if you prefer), then adding the -resume
option to the command you used to launch the pipeline (e.g. nextflow run main.nf ...youroptions... -resume
).
Please be aware that this will overwrite the previous alpha and beta diversity files in your output folder, so be sure to save them somewhere else first!
If this doesn't work (nextflow -resume is a bit tricky), you could try to force it by removing the subdirectories where alpha and beta diversity processes were run, in the MetaPhage work
directory. You can find these subdirectories by looking at the hash code related to the process, as shown in the figure i attach below.
You can see in the example that the alpha_diversity and the beta_diversity processes hash codes are e9/3e3e40 and c7/9aa316. These codes identify the related subdirectories in work (e.g. ~/MetaPhage/work/e9/3e3e40) that you should remove, before running the pipeline with -resume.
Let me know if this work!
from metaphage.
Hi @MattiaPandolfoVR,
-resume has worked out!
I initially thought <-resume> provides just unfinished processes, not rebuilding or reassessment. That's the great option.
Thank You!
from metaphage.
Related Issues (20)
- How can I limit the maximum number of CPUs used by MetaPhage? HOT 3
- An error with virsorter2 of MetaPhage v2 beta HOT 4
- Link for downloading databases are down HOT 1
- An error with heatmap(megahit) of MetaPhage v2 beta HOT 2
- Link for developmental version MetaPhage2 not accessible HOT 1
- Link for metaphage (v1.0) singularity image down HOT 1
- Error with VirFinder and Rscript when testing MetaPhage 2 and demo dataset HOT 7
- Error with available memory HOT 11
- CDHit step Metaphage2 HOT 1
- Errors in downloading database HOT 2
- Singularity image not available
- Issue with vcontact2 classification HOT 5
- Error - Inphared database - vcontact2 Jun2022 HOT 1
- Unable to build the MetaPhage Environment HOT 3
- virsorter error HOT 1
- Out of memory error at the Qualimap bamqc step HOT 2
- An error at the graphanalyzer step HOT 4
- Does skipping graphanalyzer step lead to errors in the next steps? HOT 1
- Error executing process > 'summary (megahit)'
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from metaphage.