mattjmeier Goto Github PK

2020_desaulniers_hamster_rrbs

2020_duplexseq_signatures

2020_pfas_degs

A quick analysis to look at DEGs in each experimental group

2021_buick_et_al_heparg_cometchip_tgx-ddi

agnp_mouse

bmdexpress-2

Software for analyzing high dimensional dose-response data

clpp_shiny

Shiny app to perform some ecological analysis on Biolog plates (community-level physiologic profiling)

custombmdexpressannotations

Code and examples for creating custom BMD Express annotations for "Defined category analysis" of GO Terms for non-model organisms

d3-in-rmd

How to get R and D3 to play nice in Rmd files

eccc

Work relating to genomics at Environment and Climate Change Canada

general_purpose_scripts

Generally useful code; one liners, etc.

hc

Work relating to genetic toxicology analysis done at Health Canada

lacz_cosmic

mattjmeier.github.io

mbcp

Analysis of microbial-based cleaning products

meier_et_al_agnp_mouse_microbiome

Code and metadata to reproduce analysis for Meier et al., Low dose antibiotic ingestion potentiates systemic and microbiome changes induced by silver nanoparticles.

meier_et_al_metatranscriptomics

Files and analysis to reproduce figures

microfiltr

accessory functions for processing microbial community data

mutilater

photoprism

AI-Powered Photos App for the Decentralized Web 🌈💎✨

r-intro

Introduction to R - first steps: expressions, functions and data

r-odaf

Omics Data Analysis Framework for Regulatory application

r-odaf_for_migration

shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.

shiny_dada2

Shiny app for dada2

sigprofilerplotting

SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

skywatch

A clone of Rolf Meier's astronomy page which has since been deprecated by Xplornet

svm-r-markdown-templates

I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.

template-gabarit

Open source code repo template - Gabarit de dépôt de code source ouvert

test_repo

Testing stuff