maureencarey Goto Github PK
Name: Maureen Carey
Type: User
Company: Tempus AI
Bio: senior computational biologist at @tempuslabs, formerly at @uva-tumi
Twitter: MaureenACarey
Location: Cambridge, MA, USA
Maureen Carey's Projects
cobrapy
COBRApy is a package for constraint-based modeling of biological networks
community_standards_supplemental
supplemental information for our community standards manuscript, DOI: 10.15252/msb.20199235
cparvum_genomes_manuscript
analysis for c parvum genomes manuscript
cryptosporidium_microbiome
analysis code for our manuscript on the microbiome during cryptosporidium infection, DOI: 10.1093/cid/ciab207
cv
ipfal17
model and analysis code for iPfal17, presented in Carey, Papin, & Guler, DOI: 10.1186/s12864-017-3905-1
maureencarey.github.io
personal wesbite
metabolite
Shiny app for visualization of the toy GENREs
metabolite_manuscript
metabolomics
metabolomics analysis (code and data, with figures in .html) for mSphere submission by Carey and Covelli et al (2017), DOI: 10.1128/mSphere.00097-18
other_tutorials
assortment of tutorials for new trainees, etc
paradigm
pipeline for generating a comprehensive database of parasite genome-scale metabolic models, BioRxiv DOI: 10.1101/772467
pydata-workshop
"Building a Recommender System from Scratch" Workshop Material for PyDataDC 2018
working_w_slurm
workshops
Material for Forwards workshops
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