Related Issues (20)
- Build AMR PRG HOT 11
- Code script to go from pandora VCF to DST result HOT 7
- Investigate R28980 & R20574 sample swap HOT 10
- Are all repeats samples clustered together HOT 9
- Mixed technology distances HOT 15
- Compare trees generated by mixed technology, with that from illumina/compass HOT 1
- Create sample resistance reference sheet HOT 1
- Get coverage info for all samples HOT 2
- Run mykrobe on all samples
- Concordance of resistance predictions with Illumina HOT 28
- Concordance of resistance predictions with phenotype HOT 15
- De novo SNP discovery in resistance genes HOT 3
- Visualise available phenotype information HOT 3
- Nanopore homopolymer deletions in katG HOT 2
- Rebasecall nanopore data with guppy v5.0.16 HOT 12
- Try mykrobe with a lower proportion of expected depth HOT 4
- Mutation concordance analysis HOT 9
- Submit data to the ENA HOT 5
- Update repository READMEs
- RIF and INH off-catalogue mutations HOT 6
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